The pmemd.cuda GPU Implementation
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Performance of Amber 18, NAMD version 2.13 and GROMACS 2018 measured as
Nvidia Cuda Apps Jun27 11
Full article: Solvated and generalised Born calculations differences using GPU CUDA and multi-CPU simulations of an antifreeze protein with AMBER
The pmemd.cuda GPU Implementation
GUI for setup and control of Amber18/20 molecular dynamics simulations
Statistical machine learning for comparative protein dynamics with the DROIDS/maxDemon software pipeline - ScienceDirect
Toward Fast and Accurate Binding Affinity Prediction with pmemdGTI: An Efficient Implementation of GPU-Accelerated Thermodynamic Integration.
Schematic representation of the main components of the MIST library.
Biomolecules, Free Full-Text
AMBER14 & GPUs
Fast Implementation of the Nudged Elastic Band Method in AMBER
Full article: Solvated and generalised Born calculations differences using GPU CUDA and multi-CPU simulations of an antifreeze protein with AMBER
GPU-Accelerated Implementation of Continuous Constant pH Molecular Dynamics in Amber: pKa Predictions with Single-pH Simulations
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